Data Sources

GeneWeaver incorporates a number of free, public data sources. The GeneWeaver team is grateful to the individuals, projects, and resource providers behind all of the data collections we currently integrate.

ABA

Allen Brain AtlasABA



Mouse Brain Atlas - Differential Gene Expression

5457926 genes in 785 genesets.

Updated: January 1, 2015
URL: http://brain-map.org
Publication: PMID: 17151600
CTD

Comparative Toxicogenomics DatabaseCTD



Things

1006611 genes in 22545 genesets.

Updated: January 1, 2012
URL: http://ctdbase.org/
Publication: PMID: 25326323
KEGG

Kyoto Encyclopedia of Genes and GenomesKEGG



KEGG - Pathway and Disease

102711 genes in 1339 genesets.

Updated: January 1, 2012
URL: http://kegg.jp
Publication: PMID: 10592173
MeSH

Medical Subject HeadingsMESH



MeSH - "Diseases", "Chemicals and Drugs", "Psychiatry and Psychology", and "Phenomena and Processes" Subtrees

4204324 genes in 12187 genesets.

Updated: January 1, 2015
URL: https://www.nlm.nih.gov/mesh/
Publication: PMCID: PMC35238
MSigDB

Molecular Signatures DatabaseMSIGDB



MSigDB - Collections H, C1, C3, C4, C6, and C7

663802 genes in 3738 genesets.

Updated: January 1, 2015
URL: http://software.broadinstitute.org/gsea/msigdb
Publication: PMID: 16199517
OMIM

Online Mendelian Inheritance in ManOMIM



OMIM - Phenotypic Series and Morbid Maps

1533 genes in 738 genesets.

Updated: January 1, 2015
URL: http://omim.org
Publication: PMID: 25428349
PC

Pathway CommonsPC



PC - Top Pathways

172829 genes in 1149 genesets.

Updated: January 1, 2015
URL: http://pathwaycommons.org
Publication: PMID: 21073192

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Supported by NIH R01 AA18776 jointly funded by NIAAA and NIDA, and JAX Center for Precision Genetics NIH U54 OD 020351

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